Protein Info for ABIE53_000413 in Paraburkholderia graminis OAS925

Annotation: methionine biosynthesis protein MetW

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 TIGR02081: methionine biosynthesis protein MetW" amino acids 12 to 200 (189 residues), 266.5 bits, see alignment E=5.7e-84 PF07021: MetW" amino acids 12 to 199 (188 residues), 269.7 bits, see alignment E=3.4e-84 PF13489: Methyltransf_23" amino acids 20 to 108 (89 residues), 38.9 bits, see alignment E=1.9e-13 PF13847: Methyltransf_31" amino acids 26 to 119 (94 residues), 42.9 bits, see alignment E=1.1e-14 PF13649: Methyltransf_25" amino acids 28 to 112 (85 residues), 40.1 bits, see alignment E=1.3e-13 PF08241: Methyltransf_11" amino acids 29 to 113 (85 residues), 44.9 bits, see alignment E=3.8e-15

Best Hits

KEGG orthology group: None (inferred from 98% identity to bug:BC1001_0075)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>ABIE53_000413 methionine biosynthesis protein MetW (Paraburkholderia graminis OAS925)
MNQRALDYLALRPDFRAIARWVEPRATVLDLGCGDGSLLSLLTEELDVQGYGIEINDAGV
LAATQNGVNVIQQNLEDGLRLFEDGSFDFAVLSQTLQTIHQTAAILRETVRVGRECIVSF
PNFGYWAHRLSVVRGRMPVSKSLPYQWHNTPNVRVLTIKDFEALAPEVGIEILDRVVLHD
GQTVRWGVNWRGSLAVYRVKKS