Protein Info for ABIE53_000404 in Paraburkholderia graminis OAS925

Annotation: rod shape-determining protein MreC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 15 to 32 (18 residues), see Phobius details TIGR00219: rod shape-determining protein MreC" amino acids 9 to 276 (268 residues), 162.5 bits, see alignment E=6.2e-52 PF04085: MreC" amino acids 130 to 273 (144 residues), 139 bits, see alignment E=5.2e-45

Best Hits

KEGG orthology group: K03570, rod shape-determining protein MreC (inferred from 88% identity to bug:BC1001_0066)

Predicted SEED Role

"Rod shape-determining protein MreC" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>ABIE53_000404 rod shape-determining protein MreC (Paraburkholderia graminis OAS925)
MEYSPPPLFKQGPSALARLVFFVVLALALLISDARFKTLEIVRGVLGVGLYPLQRAALVP
RDVFMGAADLAVTSATLRSDNEKLRTRNLQLSQQANTAAELSAENGHLRALLQLSQRATT
QSLPAEIQYDTRDPFTQKVVINRGAQQGIQNGSPVVNEDGVIGQVTRVFPLQAEVTLLTD
KDQAVPVQIVRTGLRSVIYGTLKGDTLDLRFVPISADVQTGDELVTSGLDGVYPPGLPVA
KVVRVDKQADTAFARVICLPIAPVRGARQLLVLHYVNDVPPRPAEEPDPAAAAKEAAKAK
KGAKADGKAAADKSAKPAEKPGADKTAAAKPADNTPAQAAQAGKQGAADQKSAASKKPAA
AEKAKPQAAPGAKP