Protein Info for ABIE53_000103 in Paraburkholderia graminis OAS925

Annotation: flagella basal body P-ring formation protein FlgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 transmembrane" amino acids 27 to 48 (22 residues), see Phobius details PF17656: ChapFlgA_N" amino acids 333 to 405 (73 residues), 71.8 bits, see alignment E=7.2e-24 TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 396 to 531 (136 residues), 132.6 bits, see alignment E=4.7e-43 PF08666: SAF" amino acids 409 to 470 (62 residues), 46.9 bits, see alignment E=5.1e-16 PF13144: ChapFlgA" amino acids 409 to 530 (122 residues), 106.6 bits, see alignment E=1.3e-34

Best Hits

KEGG orthology group: K02386, flagella basal body P-ring formation protein FlgA (inferred from 78% identity to bug:BC1001_3396)

Predicted SEED Role

"Flagellar basal-body P-ring formation protein FlgA" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (532 amino acids)

>ABIE53_000103 flagella basal body P-ring formation protein FlgA (Paraburkholderia graminis OAS925)
MDQPTFDPTPRARSAAGHRMSAAVLRVVTRLVVGSSLAVSVAGGVALFANAAHAGEADGP
IVIAGPNEQNPAALAALAERMQATPAKRTGSAATLAAATAQSLGRGPSTRDADPFARAAN
ASGSIVIAGAGETPAAPQMIRTNFKPDANGVVTIPAPGRGGSANLGDTASPTDAPARANV
SINAMQASRRVVPVVVTPAPSTNSARDAAGVQPVAVNAPSSAMSRAAVGVSGTAASADSS
VNDGFETLASRGEPPQFGADGKPVAQRSKASANSTNTAAARVSATRAVASAVAPAATVAS
APAQQNPRTAATTIAAAAAQPAPLPGQQDPEAIRAVALAFLQQQSAGLPGKVDITVAPAF
PRGLAACMMLEPFMPSGARLWGRVTVGVRCAGQRPWTIYLQARVSLHATYYLASRAMSAG
EVLTAADLVAREGDLTGLPQAIVTDPSQALGSVTLTRVSAGMPLRRDMLKSASAVSIGQT
VRVVAAGDGFAISAEGSAMNNASPGQQVRVKTANGQVISGIVKDGSTVEIQL