Protein Info for ABIE53_000074 in Paraburkholderia graminis OAS925

Annotation: flagellar M-ring protein FliF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 transmembrane" amino acids 66 to 85 (20 residues), see Phobius details amino acids 491 to 509 (19 residues), see Phobius details TIGR00206: flagellar M-ring protein FliF" amino acids 58 to 598 (541 residues), 420.4 bits, see alignment E=7.1e-130 PF01514: YscJ_FliF" amino acids 86 to 260 (175 residues), 242.6 bits, see alignment E=2.5e-76 PF08345: YscJ_FliF_C" amino acids 291 to 466 (176 residues), 164.5 bits, see alignment E=2.3e-52

Best Hits

KEGG orthology group: K02409, flagellar M-ring protein FliF (inferred from 96% identity to bug:BC1001_3371)

Predicted SEED Role

"Flagellar M-ring protein FliF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (600 amino acids)

>ABIE53_000074 flagellar M-ring protein FliF (Paraburkholderia graminis OAS925)
MDSSANSLINPDARMGLAGAQPGAAAAGAGQPGGNADLGGLGGGLGGNFGQRLSGLAQMR
GNPRAPLIFAVALLVAIVAGLFLWSRAPDYKVLYSNLSDRDGGAIITALQQANIPYKFSE
AGGAILVPSEQVHEMRLRLASQGLPKSGSVGFELMDNQKFGISQFAEQINYQRALEGELE
RTIESVSSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSA
VPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNA
HSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQ
PASAPINAPAGASGGVTTTPVSDRKDMTTNYELDKTVRHLEQPMGGIKRLSVAVVVNYLR
VVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTTALDPNADLPWWR
TPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPVVAAALPSPDEPILLDGI
PAAERAGNAALEMDNGDAELQALENAKHKYERNLEFARSIARQDPKIVATVVKNWVTDER