Protein Info for ABIE53_000016 in Paraburkholderia graminis OAS925

Annotation: MFS family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 23 to 49 (27 residues), see Phobius details amino acids 61 to 79 (19 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 226 to 248 (23 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 293 to 311 (19 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details amino acids 382 to 401 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 23 to 197 (175 residues), 63.3 bits, see alignment E=3.2e-21 amino acids 238 to 402 (165 residues), 31 bits, see alignment E=2e-11 PF07690: MFS_1" amino acids 27 to 281 (255 residues), 124 bits, see alignment E=1e-39 amino acids 264 to 405 (142 residues), 47.4 bits, see alignment E=2.1e-16 PF06779: MFS_4" amino acids 42 to 391 (350 residues), 34.3 bits, see alignment E=2.6e-12

Best Hits

KEGG orthology group: None (inferred from 93% identity to bug:BC1001_3312)

Predicted SEED Role

"Major facilitator superfamily (MFS) transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>ABIE53_000016 MFS family permease (Paraburkholderia graminis OAS925)
MTPASSTADTPASARPGYAARALIASALGYAMDGFDLLILGFMLPVIAADLHLSSTQAGS
LVTWTLIGAVAGGLIFGVLSDYYGRVRMLTWTILVFAVFTGLCALAQGYGDLLVYRTIAG
IGLGGEFGIGMTLVAEAWPAAQRARVSSYVGLGWQLGVLAAALLTPLLLPVIGWRGMFAL
GLLPAVVSFFVRRRVEEPALFTERVARGMRKLPLKLLIADARTARASLGVAVLCSVQNFG
YYGLMIWLPSYLSKTFGYSLTKSGVWTAATVVGMACGIWLFGIAADRFGRKPAFLFYQVG
AVAMVFVYAHLTTPTALLIGGAAMGVFVNGMIGGYGALISELYPTDARATAQNVLFNVGR
AVGGFGPVAVGALAAHYSFGTALVFLASIYLLDVLATLFLIPERRGAELH