Protein Info for ABIE51_RS19045 in Lysobacter sp. OAE881

Annotation: fimbria/pilus outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 861 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13954: PapC_N" amino acids 35 to 177 (143 residues), 140 bits, see alignment E=8.7e-45 PF00577: Usher" amino acids 193 to 753 (561 residues), 549.5 bits, see alignment E=1.6e-168 PF13953: PapC_C" amino acids 762 to 825 (64 residues), 55.2 bits, see alignment 7.3e-19

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 41% identity to rme:Rmet_4959)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (861 amino acids)

>ABIE51_RS19045 fimbria/pilus outer membrane usher protein (Lysobacter sp. OAE881)
MVVVLAALGQVPFAASASPDPSPLPAPEPAPDAVEFSPLFLGESATSTDLTRFEHANAVA
PGEYPVDVYLNGYRLARRTIELRALADGAVRPCLSGEALDALGVDTARLKSEGVDVSQTC
IDVERVIADARASFDMNQLRLDLSIPQVALRRSARGQVDPALWERGVDALTLGYNVSANQ
LDYDSGGHTTGAYAGLTMGLNLGGWRLRNQSSWRRESGAGEDFQNIRSYAEHDVTALQSQ
FTLGDTFTSGELFDSTALRGIKLATDDRMRPDSIRGYAPVVRGIAETNARVVIRQAGFVI
LETNVAPGAFEIDDLYATGYGGDLEVTVIEADGRERAFSVPYAAVPQLLRPGVWRYSAAA
GQVRNGALHGAAPNFIEGTFQRGLGILLTTYAGVQATDGHLYRSVLVGAAFNTPVGAVSL
DVTGAKTKFALPDEDAAGYSARLTYSKSIPQTNTDFALAAYRYSSRGYLSLDDAVRLDDE
VRNGELRGGVGDGAGNQRSRFQLTVSQSLGERGGSLFVSGSRNDYWSGSLPVDSSYQVGW
NRQFRNVSLGVNASRTRLAGRGYDNQANLSLSMPLGSSGFRSTPPQVTLAAGHDHDGNSV
QAGVTGNAGDRRQFNYGVSGNFNDRDTDTVGINAGWRAALSTLGMSYSRNAQSRQASVSA
SGGMVAHAGGITLAPQLGDTIGVVDARNAAGARLQSDPAIRVDRRGYAIASSLIPYRIND
VTLDPNGLAADVQLDTSRLQAIPRAGAVVALKFETTIGRSILIRARTEDGRTLPFGAQVV
DGAGKDVGIVGQGGQVFVRLSREDRRLLTVSWASDGQCTLDVSPPPAAPHEPAGLPVVDA
VCHASVPAPIAQLMGPREETR