Protein Info for ABIE51_RS18150 in Lysobacter sp. OAE881

Annotation: CHASE3 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 981 transmembrane" amino acids 53 to 73 (21 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details PF05227: CHASE3" amino acids 84 to 213 (130 residues), 107.3 bits, see alignment E=2.1e-34 TIGR00229: PAS domain S-box protein" amino acids 365 to 487 (123 residues), 43.1 bits, see alignment E=2.2e-15 PF00989: PAS" amino acids 369 to 479 (111 residues), 23.9 bits, see alignment E=1.2e-08 PF08448: PAS_4" amino acids 375 to 483 (109 residues), 41.1 bits, see alignment E=6.6e-14 PF00512: HisKA" amino acids 488 to 554 (67 residues), 64.4 bits, see alignment 2.8e-21 PF13581: HATPase_c_2" amino acids 600 to 690 (91 residues), 28.9 bits, see alignment E=3.5e-10 PF02518: HATPase_c" amino acids 602 to 712 (111 residues), 102.3 bits, see alignment E=7.5e-33 PF00072: Response_reg" amino acids 857 to 936 (80 residues), 60.6 bits, see alignment E=5.5e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (981 amino acids)

>ABIE51_RS18150 CHASE3 domain-containing protein (Lysobacter sp. OAE881)
MQVSDHWPAAVVARITAPGETFTAVAPPPWQDRAAGGRAGDRGKRGVGKPRIRLHNIGFG
LALLVILLLLAQARRTQEDLLRSNQAFSRSAEVLTTVQDTLSALQDVETGMRGYVITGTD
AFLQPYHDGNRRLVEARARLRQLVGNQRDAAWWGRTNHDIDERLRLAKVNVDLRRRAGLE
AASQSVAQAGGKEAMDRVRSLLGELEAAERERMMVEGRAVERRVAEFRRWTTWGTAVALV
LLAAALLSVHRSLVQRRQALHLARAGEARQRAILDAIPDLLWQFDTNGNPRLLSSDYGAT
LPPALLLAIRSALPHVQADSAVHTLTAQEASGQVFEARLVAIDDGHLAIVREVTEFIVQE
RALRDQHDFLRAIVDSDESLVFVRSAGGRFTLCNIAFAATMGLTPSQVEGRRPSDLAGQR
IIEPLLQADDALLQGEDEWRADRVRIVDVREQERWMQVLKRPLVRSDGQRQVLTVVIDVS
AQQRMERMKDEFISTISHELRTPLTSIRGALGLVVGGTAGELPDSVRPLLEIAHKNTERL
VRLINDILDIEKLQWGGLSLQTHRLPLRAMVAQSIDQIATYAREFEVTVEFGPGDDGVVE
VDVDRFAQVMANLLSNAIKHSHAGGVVEVSVTRRDGGLQINVRDHGEGIPENFRPRVFER
FAQADASDVRRRGGTGLGLAITQSLVEKMSGRIGFETETGQGTRFFVWLPEAMRLNDPAP
SNTADDLTPYVVLLQDESALADELARVLREHGYRTLLANDIARARELLQSPNAKALAIDL
GSAGTSARGVLRELRSEPEFRSLPVLLLGIRPPSVDSDGLRGGAVGVVDWLGKPLDPEQV
AEAVRTTLRDPSRRFEVLHVEDDEDVCALLRTLLQGHGLNLHAAGSLAQAREQLSHRRHD
LVILDLKLPDGDGSELLEELARARPPTPVIIFSAQDGGLAESRAVLRRLVKSRHHARELA
TLILDTLRHWPAGGAQKEETG