Protein Info for ABIE51_RS18055 in Lysobacter sp. OAE881

Annotation: TldD/PmbA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 PF01523: PmbA_TldD_1st" amino acids 32 to 89 (58 residues), 25 bits, see alignment 2.6e-09 PF19290: PmbA_TldD_2nd" amino acids 148 to 217 (70 residues), 27.8 bits, see alignment E=4.7e-10 PF19289: PmbA_TldD_3rd" amino acids 222 to 438 (217 residues), 149.3 bits, see alignment E=1.4e-47

Best Hits

KEGG orthology group: None (inferred from 86% identity to xac:XAC0120)

Predicted SEED Role

"TldE/PmbA family protein, Actinobacterial subgroup" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>ABIE51_RS18055 TldD/PmbA family protein (Lysobacter sp. OAE881)
MSIFTEEQSKAILDKVIKLSKADQISATLSGSVDGNIRFALNNISTSGIVDNTELAVEVA
FGNRVGTATINEFDDASLERVVRRAEDLARLAPENPEFMPAIEKQTYKPSPTFSESTAGI
TPEYRAKVAADSIGPCKGEKLIAAGFLEDGQNFVAIANSNGNFAYQRGANFNYTCTVRTE
DGRGSGWVGRNLKDASDFKADADIRTAMRKATESAEAKALEPGKYTVILEPAAAAGLISF
MMNFFDARQADEGRSFLSKKGGGNKLGEQVYDSRVNISADPWDPRAPVLPWDSEGLPREK
MNIVENGKVVALNYSRYWAKKQGKRAVGEPGNLLVAGGDKSTADLVRGTQKGILVTRTWY
IRMVDPQTVLLTGLTRDGTFYIENGQIKHPVKNFRFNESPVIMLNNIEELGRPVRVAGDE
SSFVMMIPPMKLRDFTFTSLSDAV