Protein Info for ABIE51_RS17975 in Lysobacter sp. OAE881

Annotation: inner membrane protein YiaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 signal peptide" amino acids 1 to 11 (11 residues), see Phobius details transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 105 to 121 (17 residues), see Phobius details PF05360: YiaAB" amino acids 10 to 62 (53 residues), 72.1 bits, see alignment E=1.8e-24 amino acids 73 to 126 (54 residues), 67.2 bits, see alignment E=6.1e-23

Best Hits

Swiss-Prot: 61% identical to YIAA_ECOLI: Inner membrane protein YiaA (yiaA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 72% identity to rpf:Rpic12D_1506)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>ABIE51_RS17975 inner membrane protein YiaA (Lysobacter sp. OAE881)
MDLRKPSGAFVGASWLALLLGTCAFLAGLWNATMSLSEKGYYFTVLMYGLFSAVSIQKSV
RDRAQGIPVTAIYYGLSWFSILMALTLLVVGLFNATSLTLSEKGFYGMAFALSLFAAIAV
QKNTRDLASQREAI