Protein Info for ABIE51_RS17045 in Lysobacter sp. OAE881

Annotation: sel1 repeat family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 731 PF08238: Sel1" amino acids 275 to 300 (26 residues), 10.4 bits, see alignment (E = 4.6e-05) amino acids 407 to 441 (35 residues), 8.7 bits, see alignment (E = 0.00015) amino acids 513 to 540 (28 residues), 13.1 bits, see alignment (E = 6.1e-06) amino acids 551 to 579 (29 residues), 8.9 bits, see alignment (E = 0.00013)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (731 amino acids)

>ABIE51_RS17045 sel1 repeat family protein (Lysobacter sp. OAE881)
MAAEPAFDAAQAWERFLAKGDITKAFAAFDVLDKVGYDAVNVDAAQCGRQQQALRKAAQD
APVSIAIRRAAFLCAQAVGDDAGAERELAVLAALSRHALASTGEPGVSKPIRILAPVDAV
ALLVTGGLRTSYFYYGQLWPKGSLPQFAAAWDPETQTERHYAFDVIDTIYTLDRQNAIHG
NVALRNSYALNLVNRWAEAGEVSDLDLAATRAAHEAPDPRGKLAALKPAAQKGGLLSLST
WLTLCDQRPFDGCADDLVEPLLAGAERGEAYPTLLLALIHARGIGVARDEAAAMKLLDRA
DAIWPSGAVGQYAVYWEMLGTPYPAALQTRLERMQAHGSRMPRRLAIHRKVDEAKAELSA
DEIAFLADPAENGNGLGFAMLASYYQGRGEAAERRRWLEKAAAAGSARAQEELGWQLFYG
EAATRDPERGGRLISEAAQSGRTWAMRHMAEQERLAGRWKSAGMWLFAAVQGDDVDAAFD
LIDIFMLDMPEIGTSKDAVATLRSLSDTYDSARARRQLAELALEGVGMPKDPAQAERWLL
VDAEKGDHQSQAQLAMGYFYGHFGAIDEAKGQQWIQPALEGKEERAFTGYAGWLYHRKRT
PESRAEAVALWNRSIEAGQTAAYNELAWASCTSPYPDVFDAQRGLATVEKMGDPAVLDLP
EQDTVAACYAAGGRFAQAIDLQSKAIEQLDVLARANKARFKPMADDFRVRLALYRKGRVY
LSRDEDEVAGP