Protein Info for ABIE51_RS16845 in Lysobacter sp. OAE881

Annotation: flagellar biosynthesis protein FlhB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 93 to 115 (23 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 186 to 209 (24 residues), see Phobius details PF01312: Bac_export_2" amino acids 7 to 347 (341 residues), 409.5 bits, see alignment E=6.1e-127 TIGR00328: flagellar biosynthetic protein FlhB" amino acids 7 to 353 (347 residues), 401.6 bits, see alignment E=1.6e-124

Best Hits

KEGG orthology group: K02401, flagellar biosynthetic protein FlhB (inferred from 52% identity to psu:Psesu_1484)

Predicted SEED Role

"Flagellar biosynthesis protein FlhB" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>ABIE51_RS16845 flagellar biosynthesis protein FlhB (Lysobacter sp. OAE881)
MSSEDQEDKTEQPSEKRLREARERGDVPRSRELGNVAVLGCAAMALVATGSGIGSASQDW
LRQALTIDPAILDQPDRLVPHAASLLLGLLKPMLPVLLAALGACFIAPMVMGGLRFASKS
LAPDFARLSPMNGFKRMYGKESLAELVRSVLRVLLIGGLAGMVVWGAFRHLTDMAGMSLH
EGVAVGLSLITKAVIAMVGALGLLALIDVPWQHWSYRNRLKMSKQELRDEYKESEGNPEV
KARVRQIAAQLSRRQQMEAVPTADVVVTNPTHYAVALKYEAGKMRAPKVVAKGVDEIALA
IRDVAGKHRVSIIEAPPLARALYRHAQIDQEIPVKLYAAVAQVLSYVYQLKRWHPAHGPM
PTLGDVSVEKGLADGDSTVKDPTA