Protein Info for ABIE51_RS16835 in Lysobacter sp. OAE881

Annotation: flagellar biosynthetic protein FliQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 transmembrane" amino acids 16 to 41 (26 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details PF01313: Bac_export_3" amino acids 11 to 77 (67 residues), 73.9 bits, see alignment E=3.9e-25

Best Hits

Swiss-Prot: 37% identical to FLIQ_PECCC: Flagellar biosynthetic protein FliQ (fliQ) from Pectobacterium carotovorum subsp. carotovorum

KEGG orthology group: K02420, flagellar biosynthetic protein FliQ (inferred from 67% identity to xcb:XC_2272)

Predicted SEED Role

"Flagellar biosynthesis protein FliQ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (89 amino acids)

>ABIE51_RS16835 flagellar biosynthetic protein FliQ (Lysobacter sp. OAE881)
MTPETALTEIGRGLQMALLLGAPPLIAVLVVGVVVGIVQAATQLNEPTIGFVVKAIALVA
TLALTGNFLLGKLVGFTTDLFHRIPHIVG