Protein Info for ABIE51_RS16445 in Lysobacter sp. OAE881

Annotation: PepSY-associated TM helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 25 to 26 (2 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 4 to 338 (335 residues), 166.3 bits, see alignment E=7.1e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>ABIE51_RS16445 PepSY-associated TM helix domain-containing protein (Lysobacter sp. OAE881)
MLSWLHLWTGLTAGLVFALASLAGTVLVFHVDLLKLQHPQLAQHAPVADGRVLAQLIERW
GPEGMRSLDVPRDELPVWQAYFEDGHRQYFAPEDGALLLYRSQHDDVLLWLHEWHVDLLG
GKTGREVWGVIGCISLAMILIGLYLWWPKRGRFVAQLKMHAGPPVRRWLTWHRSSGVILL
PLLLLATVTGVGMVYSKAFQKALTATFGGKNVKAPELPASDAAIDWTRAIAQARIAIPEA
RLARVSVPDASEGAVSFRLQAKGEWHPVGRSTVVMSRDGRVVQAFDATTHRLGMRMSQAF
YPLHVGAVGGTAMKWITAFTGLLPMFLLVTGFLFWRRRRGKR