Protein Info for ABIE51_RS16395 in Lysobacter sp. OAE881

Annotation: PDZ domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13180: PDZ_2" amino acids 107 to 190 (84 residues), 42.9 bits, see alignment E=7.9e-15 amino acids 275 to 332 (58 residues), 36.7 bits, see alignment E=6.4e-13 PF00595: PDZ" amino acids 109 to 179 (71 residues), 26.7 bits, see alignment E=9e-10 PF17820: PDZ_6" amino acids 123 to 156 (34 residues), 33.9 bits, see alignment 3.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>ABIE51_RS16395 PDZ domain-containing protein (Lysobacter sp. OAE881)
MIRTRNTTRLAATIALLLMCMGAGAQTPKADAERARQDAAKARQEAEHARQDASKARQDA
ERTRQIEAARADLNRAAQRYAELTRRHADFDRAQFEREFEKRFARQPVLGVVLSPDPKSG
VRIAAVTPDSAAAKAGLRAGDVLTSIGDTRLDTGSPTARLEKARSRLRLLETGKTVALTY
TRDGRTATARATPMLGDRLVVARDADGNPLARSMPMVAPQVRNELIRLDCEDDDSDCRLP
LLSEAFRWNGLNLATVDAQLGRYFGADRGVLVLSTGADLAGLQTGDVIQRIDGKPVNSPR
EAMAALRDKPADSRVAVTYLRDRKSATTQITVPKTAMLRIPRPPMPPAPPAAPKAPGAPA
VPAPPAAPAAPPALPKPAQVVTPPAPPAPPKAPEPPQELVNYAISL