Protein Info for ABIE51_RS16060 in Lysobacter sp. OAE881

Annotation: YggS family pyridoxal phosphate-dependent enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF01168: Ala_racemase_N" amino acids 9 to 223 (215 residues), 93.8 bits, see alignment E=6.5e-31 TIGR00044: pyridoxal phosphate enzyme, YggS family" amino acids 25 to 222 (198 residues), 216 bits, see alignment E=2.8e-68

Best Hits

Swiss-Prot: 53% identical to PLPHP_ECOL6: Pyridoxal phosphate homeostasis protein (yggS) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K06997, (no description) (inferred from 71% identity to xal:XALc_2161)

Predicted SEED Role

"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>ABIE51_RS16060 YggS family pyridoxal phosphate-dependent enzyme (Lysobacter sp. OAE881)
MRARALKDITLQLQNAAAAAGRPGPRLLAVSKTQDATAVAELADAGQRAFGENYVQEAAG
KAAELAGRGLEWHLIGHLQSNKAPVAATLFDWVQTVDRPKLVEALARHRPADRPPLNVLI
QVNIDDEASKHGCQPDDVPALARAIAAEPRLCLRGLMAIPTPHPDPGRRRGAFRRTHALF
DALRAGYPTVDTLSMGMSDDYAIAIAEGATMVRIGTALFGARPPKGT