Protein Info for ABIE51_RS16025 in Lysobacter sp. OAE881

Annotation: YqgE/AlgH family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02622: DUF179" amino acids 17 to 175 (159 residues), 176.4 bits, see alignment E=2.1e-56

Best Hits

Swiss-Prot: 71% identical to Y2748_XANCP: UPF0301 protein XCC2748 (XCC2748) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 77% identity to xal:XALc_2157)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (188 amino acids)

>ABIE51_RS16025 YqgE/AlgH family protein (Lysobacter sp. OAE881)
MSVTPTPLANQLLIALPALADSNFARSVALICQHDADGAMGIVVNRASEYTLGEVLGQMG
LEGGDETMRAQPVLAGGPVHPERGFVLHDGGMQWDSTMAITEHLFLTTSRDILEAMARGE
GPENAIVALGCAGWGSGQLEHELTENDWLTAPADAELLFELPLDARWQAAAGRIGVDFAH
LADYAGHA