Protein Info for ABIE51_RS15785 in Lysobacter sp. OAE881

Annotation: FAD:protein FMN transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF02424: ApbE" amino acids 20 to 299 (280 residues), 251.2 bits, see alignment E=6.4e-79

Best Hits

KEGG orthology group: K03734, thiamine biosynthesis lipoprotein (inferred from 62% identity to sml:Smlt1139)

Predicted SEED Role

"Thiamin biosynthesis lipoprotein ApbE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>ABIE51_RS15785 FAD:protein FMN transferase (Lysobacter sp. OAE881)
MHAPPASVTRAVDVLGGATMGTTWSVKLVSPRNADLHALHSGVQSRLDDVVAQMSNWEAA
SALSRYNAADAGSWHALREEFFSVLSCALDIAHASGGAFDPTVGPLVDGWGFGPSGATTE
RFSPEAARAQVQWRRVVLDRNERRVLQPGGTRLDLCAIAKGFGVDAVAAHLRSCGVDAAL
VEVGGELFGFGRKPDGTPWRVIVEGWDGDEDDAREPRVLALDGLAVATSGDRWHRREHRG
RRISHTLDPRSGHPVTNAPVAVTVAAGDAMRADAWATALTVLGTHEGMDVANAHGLAARF
VDVRPSSQGFADIVEERMTPAFEALLQA