Protein Info for ABIE51_RS15075 in Lysobacter sp. OAE881

Annotation: peptide MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 86 to 103 (18 residues), see Phobius details amino acids 109 to 127 (19 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 225 to 242 (18 residues), see Phobius details amino acids 268 to 288 (21 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 333 to 359 (27 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details amino acids 398 to 418 (21 residues), see Phobius details TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 12 to 203 (192 residues), 178.3 bits, see alignment E=1.5e-56 PF07690: MFS_1" amino acids 25 to 251 (227 residues), 85.6 bits, see alignment E=3.2e-28 PF00854: PTR2" amino acids 87 to 205 (119 residues), 99.1 bits, see alignment E=2.7e-32 amino acids 223 to 391 (169 residues), 82.2 bits, see alignment E=3.6e-27

Best Hits

KEGG orthology group: K03305, proton-dependent oligopeptide transporter, POT family (inferred from 38% identity to lil:LA_2414)

Predicted SEED Role

"Di-/tripeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>ABIE51_RS15075 peptide MFS transporter (Lysobacter sp. OAE881)
MSAPAAPRDGVRWFFNQPPGLAILFLTQMWETFSYFGMRALLVYYMTKQLLIGQQQASMI
YGVYTATVYFTPIVGGVIADRWLGRRRAVIIGGAIMAFGHFLMASESLFFFALAAIALGN
GLFLPSLPSQIDGLYAKDDPRRGSAYNFYYVGLNLGGLLAPLVCGTLGEVYGWHWGFGAA
GIGMLGGLLLYVFGQRWLPQEPPRSARVVETTTDATPRDALKQRVMALVAVALCVMVFRG
AYEQTGNTIALWADAGIDRSFLGLVIPMTWFQALNPLLVIALTPVLVAHWVRQARRGREP
TPARKMAMGAFGVGAAFAMLAVVDASAHGQANWVWLALFFLVLTTGELFILPIGLGLFAR
LAPKGHGATTIAGWFFTSFGGNLLAGALGMLWTSFGPSAFFGAMALVAAAAGTLLRLLDG
AVGRAEAGNATATTVSKTCA