Protein Info for ABIE51_RS14290 in Lysobacter sp. OAE881

Annotation: cation diffusion facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 159 to 185 (27 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details TIGR01297: cation diffusion facilitator family transporter" amino acids 8 to 292 (285 residues), 143.5 bits, see alignment E=4e-46 PF01545: Cation_efflux" amino acids 12 to 218 (207 residues), 145.6 bits, see alignment E=8.4e-47

Best Hits

KEGG orthology group: None (inferred from 74% identity to psu:Psesu_1878)

Predicted SEED Role

"Cation transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>ABIE51_RS14290 cation diffusion facilitator family transporter (Lysobacter sp. OAE881)
MAGGGDSTRAIFFALGANFAIAVAKGVAAFFTGSSAMLAETVHSLADCGNQLLLLLGMRQ
AKAPPSPDYPLGYGKAIYFWSFLVAVMLFTVGGMFSLYEGIHKLQHPEPLQHWYWAAGVL
VFGIIAEGVSMRACLHEVNKARGDRSLWQWFRESRQAELVVIFGEDLAALLGLVFALVAV
LLAVYTGNPLWDAIGTIAIGALLIVVAVFVAIEVKAMLIGQSVDPARQKQMRDFLEARPE
VQRVISLITLQLGNEVMVSVQAQMHERRDVETLVDQINGIERAMKQSFPEVRWSFFEPDC
KAGL