Protein Info for ABIE51_RS14020 in Lysobacter sp. OAE881

Annotation: DNA polymerase III subunit gamma/tau

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 632 TIGR02397: DNA polymerase III, subunit gamma and tau" amino acids 3 to 360 (358 residues), 402.7 bits, see alignment E=7.9e-125 PF13177: DNA_pol3_delta2" amino acids 20 to 178 (159 residues), 151.3 bits, see alignment E=7.2e-48 PF07728: AAA_5" amino acids 41 to 145 (105 residues), 24 bits, see alignment E=1e-08 PF00004: AAA" amino acids 42 to 171 (130 residues), 45.4 bits, see alignment E=3.5e-15 PF12169: DNA_pol3_gamma3" amino acids 241 to 365 (125 residues), 80 bits, see alignment E=4.7e-26

Best Hits

Predicted SEED Role

"DNA polymerase III subunits gamma and tau (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (632 amino acids)

>ABIE51_RS14020 DNA polymerase III subunit gamma/tau (Lysobacter sp. OAE881)
MSYLVLARKWRPKRFAELVGQEHVVRALSNALDTGRVHHAFLFTGTRGVGKTTIARIFAK
SLNCERGTSAEPCGECAACRDIDAGRFIDLLEIDAASNTGVDDVREVIDNAQYMPSRGRV
KVYLIDEVHMLSKSAFNALLKTLEEPPGHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE
QQINGQMTRILEAEGIAAEPGAIRQLAKAADGSLRDGLSLLDQAIAYTGASAGADGGVLA
DAGVAAMLGTVDRTRVGALLTALADGDGERLLAEVATLAEFSPEWGGVLDAFSDALHRVQ
VRQLVPGAEVEADGVDVDALAGKLRPEVVQLWYQMALNGRRDLALAPSPRAGFEMSLLRM
LAFRPAEGEGARAASSSPGASREPVRSTASAAPQGPASTPRTPPPNPFADATPSARPAPP
AAREAPPAREAAPVRDASRPPQASIEDSPPWEVPRETAVARDIPREPVRAPQPVAPPAPA
APATAQSAPPAPRPGFVHDAGIADADAWHSLVANSNLRGPARVLAEHAGFVGYADGVLSL
SLSADDDLLRSNAMTVNLVAEALAPALGVTPQIRFVEASRPAESLRERNERARDERQANA
EANFMSDPDVQRLISQHGAKVVPDSIRPYDEN