Protein Info for ABIE51_RS13985 in Lysobacter sp. OAE881

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF07726: AAA_3" amino acids 49 to 179 (131 residues), 216.1 bits, see alignment E=3.2e-68 PF07728: AAA_5" amino acids 55 to 177 (123 residues), 40.9 bits, see alignment E=5e-14 PF00004: AAA" amino acids 56 to 162 (107 residues), 28.9 bits, see alignment E=3.6e-10 PF17863: AAA_lid_2" amino acids 242 to 304 (63 residues), 63 bits, see alignment E=4.4e-21

Best Hits

Swiss-Prot: 45% identical to YEAC_BACSU: Uncharacterized protein YeaC (yeaC) from Bacillus subtilis (strain 168)

KEGG orthology group: K03924, MoxR-like ATPase [EC: 3.6.3.-] (inferred from 82% identity to psu:Psesu_2010)

Predicted SEED Role

"FIG022979: MoxR-like ATPases"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (317 amino acids)

>ABIE51_RS13985 AAA family ATPase (Lysobacter sp. OAE881)
MAVSLSTAAMLTDGLRASLDRAQTQVNALVLGKPQEVRLAFVALLAGGHVLIEDLPGLGK
TTLAHALAATLGLDFQRVQFTSDLLPADVVGVSVFDPQARHFQFHSGPVFTQVLLADEIN
RAPPRTQSALLEAMAEYQVTVDGTTHPLPEPFFVIATQNPVDLSGTYPLPDSQLDRFLLR
LSLGYPGEAAERDLLAGTDRRDLIARATPQLGVQDVIAARQAVQDVHASEALIAYVQALL
ARSRRHPGVRVGLSPRAGLALLRAARAYALLLGRAHVLPEDVQALFPAVAAHRLVAEVDA
GKDAALAKAILHAVPVD