Protein Info for ABIE51_RS12875 in Lysobacter sp. OAE881

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 121 to 148 (28 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details PF03741: TerC" amino acids 15 to 204 (190 residues), 158 bits, see alignment E=1.1e-50

Best Hits

Swiss-Prot: 55% identical to YGDQ_ECO57: UPF0053 inner membrane protein YgdQ (ygdQ) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 82% identity to psu:Psesu_0186)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>ABIE51_RS12875 TerC family protein (Lysobacter sp. OAE881)
MDIFLNPEIWIALATLTALELVLGIDNIIFISILSGKLPPHQRDKARKLGIALAAITRLG
LLLTIAWIVSLTKPLFEVFGNEFSWRDLILIGGGLFLIAKATHEIHQKLEGASEAVSTGK
VVGATFGSVIAQIMVLDIVFSLDSIITAVGMVDERWVMVAAILISIVFMLAFAKPIGDFV
ERHPTVKILALSFLIMIGLVLIADGFGQHISKGYIYTAMAFSVFVEMINLWIRKREARKT
EPVKLRERYEEVPSE