Protein Info for ABIE51_RS12845 in Lysobacter sp. OAE881

Annotation: YdcF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 36 to 56 (21 residues), see Phobius details amino acids 76 to 93 (18 residues), see Phobius details PF02698: DUF218" amino acids 80 to 244 (165 residues), 114.4 bits, see alignment E=1.9e-37

Best Hits

KEGG orthology group: None (inferred from 37% identity to tmz:Tmz1t_0817)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>ABIE51_RS12845 YdcF family protein (Lysobacter sp. OAE881)
MQALQSLLVALTFPPALSVALLIVAALFALIRWRRIAMATAVLAVAWSALLAIPSVSDWV
RGRLESRYPPVDESTLPQADAIVVLGGATHFYWLERQNVTAYDLENSRLAAGARAWLEGK
APVIVLSGGGDNGGNEAASEARIMEHAIQRLGVPQNALLLETKSRNTRDNARYTAQIARE
HGFDRILLVTSSLHMTRAVIEFRKAGVEITPVPVPESGKRESWTQRWLPSGRALWRSGRA
IKEMGAIVMSRLRN