Protein Info for ABIE51_RS12530 in Lysobacter sp. OAE881

Annotation: succinate dehydrogenase, cytochrome b556 subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 135 transmembrane" amino acids 29 to 54 (26 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details PF01127: Sdh_cyt" amino acids 8 to 123 (116 residues), 96.1 bits, see alignment E=1.6e-31 TIGR02970: succinate dehydrogenase, cytochrome b556 subunit" amino acids 9 to 127 (119 residues), 127.1 bits, see alignment E=2.1e-41 PF02300: Fumarate_red_C" amino acids 27 to 73 (47 residues), 24.4 bits, see alignment E=2.7e-09

Best Hits

Swiss-Prot: 48% identical to DHSC_PARDE: Succinate dehydrogenase cytochrome b556 subunit (sdhC) from Paracoccus denitrificans

KEGG orthology group: K00241, succinate dehydrogenase cytochrome b-556 subunit (inferred from 64% identity to psu:Psesu_1296)

Predicted SEED Role

"Succinate dehydrogenase cytochrome b-556 subunit" in subsystem Succinate dehydrogenase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (135 amino acids)

>ABIE51_RS12530 succinate dehydrogenase, cytochrome b556 subunit (Lysobacter sp. OAE881)
MANEPRVRERPLSPHLQVYRWQVQMVTSILHRATGIVLVVGSLIVTWGLLALAAGPESWS
TFTAFNRSAIGFLILFGWSWSLAYHLLNGIRHLVQDAGYAYRIESFVRNSWFSIFGSLVL
TVLIWVVAMMQRGAA