Protein Info for ABIE51_RS12380 in Lysobacter sp. OAE881
Annotation: DEAD/DEAH box helicase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2087 amino acids)
>ABIE51_RS12380 DEAD/DEAH box helicase (Lysobacter sp. OAE881) MEIAMKDPISAYGTLQAGIKRYITSAFGTNSDSFEQDRLDLLDQPGVLFQTPYVEPVPSY KSGSRLADLAAGDLPRMDDRGQKAFKAIVGAGMFAAGHRLYVHQQAMLKNALQGKHCVVV TGTGSGKTESFLLPVIANVVREATAPATQWSRPTKNPTAWTKDNLPTWDDTRKSLRGETR PAAVRALILYPMNALVEDQVSRLRAALDSDDVLKALDGHLEGNRIRFGRYNGSTPISGHP FKADGSPHKGKRSELREQLKAAVRDYTAIRRKAEQCRAEMSKAEAFGDEVAIAEAKKQLA STAEEVTFIRRMSPDAAEMFHRWEMQASPPDILVTNVSMLSIMLMRHADPAMTGDRADSD IFEQTRKWLADDRENNVFQLVVDELHLHRSSAGTEVAYLIRQLLERLEIGPDSPQLRVLA SSASLDGGAPATYEFLGNFFGYTAEEARKRFVIEAGEPLFDPKDCAAEFDESIALACLEV GHASEDAISSSGCPQVLNALGLVREDETRFNTCLLAAFDVEGRARARPLDQLSDQWFRRL PAADRRTATKGLFRAIAADDAKAMEITLPRLRLHWMAKNVEGLWATIATRDDDVNRRVGR LLPDKRMALDGQRVLEVLYCECCGTQFLCGNKITFNAPLKRPQFELTPLETQIEGLPETT IESRTDAQTYKDVGVVWLRHPGDPPAGTGDELKWRHGSIQTTEGSGPGGRPKDRKDASWV PAVINPATGLVTVGSQDGGLPCYWFHADIGEANQHEYSAMPQRCPSCKIDYSERYGRRTP VRSFVTGLARMSHLFSKHLMDVLPEGKTRKLVAFSDSREAAANLSVGVEEEQWMHLLRTF INRELQERASGSLEAKMSEALGRVEAGDQAGLKALLMEARDKLGSDLHSDLTLFAQAAMA VASGMETQEQVEQVERARGYKRGFVRVDDILAKPHANRPLSPLWRDFVANGVNPGGASID KKKVAKDRDWTSIFKSMDGRVVPQLDDDARPEEIDRISESLRQSAWRALSGRLLYDLEAQ GVGHLALPPTPNLNGPPGLAPSVFREACDSVVRILAEENRLDPNPWGKPSDGWRPDQPTG AANEGSAKRRVHQYLQKVASRNGISAATLHERLAAALMFAGHAQGNNHWAVVKLEKLWVR VCDESDRPWECANCGRIHWHASAGVCSRCTAGLEAAANGRSTAKEIEDAHYYAHEARRGS SAFRIHSEELTGQTQDQAQRQRHFRDIFFDGETIDDVVARKVLKNVDSIEFLSVTTTMEV GVDIGSLQAVMQANMPPERFNYQQRVGRAGRKGQAFSVAFTFCRGQTHDRIHFEHPSEMT GGVPPQPRVSMEDDQRILAERLVAKEVLRRAFLDIGVSWTATSQDPDTHGEMGTLADATR NIPLLRDWIEGNGECLERIAQTIAVGAGVSVPGLVDAARNLPSRVERAVTSPEFVATTLA HRLAEAGILPMFGMPTSVRELYFKLPFGKNDDERDASTLDRPADQAIADFAPGSQRTWDK RRLTPKYITGPLFRDVRSGKWMSSGMSIGAAYVHVRCGACRQLHVEPVDPSGIQAHASSQ GLWDPAWIKLPPMGVVCPNPACGSPAAKPFMVVSPRAFATDMDVGKPALGGGEGRGSSGT TDITSPRLSPDKFNDICNAKIKLGQQAAVYRTNTNRGNGFGFSEVQAIKKDGLSWSFAEG DSIWQSEEQNPDFKVAFTSPKTTDILAIRMLDRMGLKYFEGKNEPRLVRRRAAWYSAATI LQRAIALELDVDSMDIEIASVHAVTDIGGGELYLADAHPNGAGLVESALASWRSILWGCL FAEGEAPRMGRMIRDELESSTRAGNEWRSPDLLLRGFRNRQIHGLLDWQLGIDLLASMLD GGFRPGLDAEASGRALPVSREGDWSERSSRLVEAYGKNGFPVDRAVHSDSVHGWSKDGVL NVVVHPLWDGYAHERNAIGEAHRLAGELGLGKIRRVDSYNLSRRMVWVRANLGNGEVFPI EDVVPSEMLGAQPGPVAGDLTSLDALLAVPDHGTFQAAGRSWVKVAQHKLTQLGDGEEWL AAAPTGHLIPVISSLKRGMQVARLRSTNGFVPENDALNYRLVARPAK