Protein Info for ABIE51_RS11735 in Lysobacter sp. OAE881

Annotation: AarF/UbiB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 transmembrane" amino acids 510 to 532 (23 residues), see Phobius details amino acids 544 to 566 (23 residues), see Phobius details PF03109: ABC1" amino acids 108 to 345 (238 residues), 220 bits, see alignment E=4.1e-69 PF01163: RIO1" amino acids 222 to 332 (111 residues), 27.3 bits, see alignment E=3.8e-10 PF01636: APH" amino acids 299 to 329 (31 residues), 23.2 bits, see alignment (E = 8.2e-09)

Best Hits

KEGG orthology group: None (inferred from 56% identity to smt:Smal_3756)

Predicted SEED Role

"Ubiquinone biosynthesis monooxygenase UbiB" in subsystem Ubiquinone Biosynthesis

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (581 amino acids)

>ABIE51_RS11735 AarF/UbiB family protein (Lysobacter sp. OAE881)
MRDALPAPSLSPIPRPVRADALSAQSTGLARTGRILRFLMRYRGTGVFTGLDLRSSAQIA
GEVDVSDQRPEQFVKDLEALGPTFIKLGQALSTRTDLVPPPYLAALTRMQSQVTPVEFDA
IRTQVECALERPIEEVFAWFDPAPLGSASLAQVHRARLLDGRPVAVKVQRPGVAEEVKQD
LSVLDSIATGVDHTTGLGQRVRFSDWVHEFRKALVGELDYTLEAANLERFSEHLAAYPDL
LIPRPVWPLTRTRVLVMDLVNGDPLDANVLSRMRPDSLERLCESLLRGYLDQMFVHGEIH
ADPHPGNLLLTDDGRLAVIDLGMVVHVPPRQRTRLLKLMFSAVEGRGDDAADEVIALGTR
LETFDEERYLRESGQLIARYAAHAGLKDHSEGRLMLDLTRIGAMCGLRTPPELSLLGRTL
LHLEGVCRLLAPQLNVQKVIESHMPSMITAQIKRSLSMPALAVEAIDLQALVQDAPRKLS
SALSLLAENRLQVRITGLQESRLMENLQKIANRIAAGVVVAALILASAMLLRGSGPGTAN
RYEWLALVLFLVATALGLALVVSALLRDRKAKPREERGPRT