Protein Info for ABIE51_RS11235 in Lysobacter sp. OAE881

Annotation: TIGR03862 family flavoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF03486: HI0933_like" amino acids 11 to 406 (396 residues), 357.2 bits, see alignment E=2.7e-110 TIGR00275: flavoprotein, HI0933 family" amino acids 12 to 406 (395 residues), 291.2 bits, see alignment E=1.1e-90 PF13450: NAD_binding_8" amino acids 13 to 44 (32 residues), 24.8 bits, see alignment (E = 5.6e-09) TIGR03862: flavoprotein, TIGR03862 family" amino acids 31 to 412 (382 residues), 554 bits, see alignment E=1.5e-170

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 72% identity to psu:Psesu_1559)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>ABIE51_RS11235 TIGR03862 family flavoprotein (Lysobacter sp. OAE881)
MSTLPQLHARLAIVGGGPAGLMAAEVARAAGVDVDLFEAKGSVGRKFLIAGKGGLNLTHG
EPRPAFDSRYGNRAREVGAWLDDFDGEALREWARGFGIDTYIGTSGRVFPTDRKAAPLLR
GWVRRLREDGVRFHVQHRWLGWRDDGPLRFATPDGEIAVHADATVLALGGGSWPELGSDG
AWVPVLQSREVDVAPLVPSNCGFDIGWSEHFASRHAGAPLKPVVAHWHDDAGRPHELQGE
CVVTQTGIEGSLIYALSAMLRDTIAAHGEATLELDLAPGRELHRLRADLEKPRGGRSLTE
HLRRQGGIEGVKAALLYEVLGKEAMLDTQLLSRTIKRLPLRLLRARPIAEAISSAGGVRL
EALDAESLMLRTMPGVFCAGEMLDWEAPTGGYLLTACYASGVRAGRGAVEWLRRV