Protein Info for ABIE51_RS10615 in Lysobacter sp. OAE881

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1013 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 749 to 769 (21 residues), see Phobius details PF07494: Reg_prop" amino acids 300 to 322 (23 residues), 21 bits, see alignment (E = 5.2e-08) PF07495: Y_Y_Y" amino acids 679 to 741 (63 residues), 57.7 bits, see alignment 1.8e-19 PF07730: HisKA_3" amino acids 788 to 851 (64 residues), 45.1 bits, see alignment 2.5e-15 PF02518: HATPase_c" amino acids 896 to 987 (92 residues), 47.3 bits, see alignment E=5.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1013 amino acids)

>ABIE51_RS10615 sensor histidine kinase (Lysobacter sp. OAE881)
MRLLGIILFAIVAAASHATPAGESPRLERYVHQRWIEGSEAPVPVIAMAQGRYGFIWLAT
GDGLFRFDGLRFEAIVPDADDGRHESPSALLVTARGHVWTNFESSRRFAVYRDGALRILP
GPAAPSRIAQMVEGADGSIWALTANYNAELLRYRNGRWQTYDARNGLPASNAANMIVAAD
GALWVACTTGIARLPPNGDRFETVRPALRARIAQDETGRIWLFDANGIAPITGAGGRGAP
PPSRAVHRTPDEPIRGTPLIDRAGNIWIATRYEGVQRFASPLAPIDGAVVQESFTTRDGL
SSDVTNQILEDREGNLWVGTEGGLDRFRPATLVAEPALSSPAVYGDKLLAASDGSVYIGQ
AQTLYRVRPHGTPEPVLRDLVEPESLCEAPDGAIWIGMRSQILVWADGRIQRRIDRPDRQ
ANHNIIYDCAFDARDDYWISAAGSGVHRLRHDQWTTEVEPGGEIDFFPTTMVRTPSGGVV
VQIGDKLAWLDDAGRKDTRLDVGGGDIKVLTLYVDATHVYVAGAFGLSRQSDGKVETAWV
PHVSPHSRINGIVRTPHGDMWLAYPRALVRLTQRELDAALAKGELPEQAMTLGPGDGLGS
RAHSHSQRSLVRGGDGRLWLATETGTLWMDPARIASNRVPPGVLIRSIDVDGRIVRDPRN
LTLRTGASKIQIDFAVLSFADQQRVRARYKLEGFDREWVDPGLRRQAFYTNLPPGHYRFR
VIAANDDDVWNRTGATLDFEIPPTFVQSIWFPILCAVLALLVLVAMYRLRIAQVAARIRA
RLEERTEERERIARELHDTLLQGVQGLILRFQAVADRLPPDEASKSQLDSALAAADDVVA
DARDRVRDLRGSSDAGDLSQVVEHLVDDTPFDPPIPVRIVIEGRQVPVHPLIVVEISKIL
REALINISHHAQASSVEIAIGYDSRHLAVRVRDDGVGIPDHVVANGHKQGHYGMLGMRER
AEKIGGKLTVSSVQHGGSDVTLTLPARLAFAKRPSRRRGWRWLRPFGKRSGDV