Protein Info for ABIE51_RS09850 in Lysobacter sp. OAE881

Annotation: YaiI/YqxD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 PF02639: DUF188" amino acids 25 to 153 (129 residues), 172.4 bits, see alignment E=1.8e-55

Best Hits

Swiss-Prot: 69% identical to Y756_PECCP: UPF0178 protein PC1_0756 (PC1_0756) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K09768, hypothetical protein (inferred from 72% identity to sml:Smlt2020)

Predicted SEED Role

"protein of unknown function DUF188"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (164 amino acids)

>ABIE51_RS09850 YaiI/YqxD family protein (Lysobacter sp. OAE881)
MSESEITHPQVWVDADACPGVIKDILFRAAERAQVQVTLVANQWIRCPSSRFIRSLQVQG
GFDVADSEIVERMQAGDLVVTQDIPLAARVIEKGGVAVNPRGERYSPENMAERLSMRNFM
EELRGAGVQTGGPPAFHARDRQAFANQLDRWLAQRPKPRGTAPG