Protein Info for ABIE51_RS09765 in Lysobacter sp. OAE881

Annotation: ubiquinol oxidase subunit II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 65 (25 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details TIGR01433: ubiquinol oxidase, subunit II" amino acids 13 to 244 (232 residues), 325 bits, see alignment E=1.1e-101 PF00116: COX2" amino acids 153 to 225 (73 residues), 31.7 bits, see alignment E=1.3e-11 PF06481: COX_ARM" amino acids 246 to 287 (42 residues), 65.6 bits, see alignment 3e-22

Best Hits

KEGG orthology group: K02297, cytochrome o ubiquinol oxidase subunit II [EC: 1.10.3.-] (inferred from 62% identity to psu:Psesu_1308)

Predicted SEED Role

"Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)" in subsystem Terminal cytochrome O ubiquinol oxidase or Terminal cytochrome oxidases (EC 1.10.3.-)

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>ABIE51_RS09765 ubiquinol oxidase subunit II (Lysobacter sp. OAE881)
MSIARRFLQAAVLLLATVALSGCNLLVLNPAGDIAARQGQLIVVATVLMLIVIVPVIALT
LLFAWRYRASNNATYKPDWDHSTQLELVIWGIPLLIIIALGAITWISTHLLDPFRPLDQL
SAGRPVPADVKPLEIQVVALDWKWLFVYPEENIATVNEVVVPVDRPVHFRITASSVMNTF
YVPALAGMIYGMPGMESELNAVINEAGVYDGFSANYSGAGFSHMRFKFHGRSDAEYQRWV
NDVRGSSDALTRATYLELEKPSEREPVRHFARVDNGLFDAVLNRCVDTDRLCMNQMMAID
ATGGLGLDGLKPLATPRRGDPRLGAYVSSEVCSVNDAVPQSLSGSIVGMKSP