Protein Info for ABIE51_RS09435 in Lysobacter sp. OAE881

Annotation: outer membrane protein assembly factor BamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR03300: outer membrane assembly lipoprotein YfgL" amino acids 10 to 397 (388 residues), 412.9 bits, see alignment E=5e-128 PF13360: PQQ_2" amino acids 57 to 112 (56 residues), 25.9 bits, see alignment 1.1e-09 amino acids 116 to 325 (210 residues), 168.3 bits, see alignment E=3.5e-53 amino acids 309 to 396 (88 residues), 27.5 bits, see alignment E=3.6e-10 PF13570: PQQ_3" amino acids 72 to 100 (29 residues), 20.7 bits, see alignment (E = 7e-08) amino acids 101 to 144 (44 residues), 25.2 bits, see alignment 2.6e-09 amino acids 145 to 184 (40 residues), 31.7 bits, see alignment 2.4e-11 PF01011: PQQ" amino acids 126 to 162 (37 residues), 31.2 bits, see alignment 1.9e-11 amino acids 166 to 189 (24 residues), 22.2 bits, see alignment (E = 1.4e-08)

Best Hits

Swiss-Prot: 64% identical to BAMB_XANCP: Outer membrane protein assembly factor BamB (bamB) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: None (inferred from 65% identity to xcv:XCV2071)

Predicted SEED Role

"Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>ABIE51_RS09435 outer membrane protein assembly factor BamB (Lysobacter sp. OAE881)
MKHRSMLLRTSVVLLCAASLAGCSTIKGWFGGDKKKDDGKPNEPAELTDITPSVTVQKIW
SANAGKGEGRIGVRQGPVVADGRVFAAAIEGGVHAFDLQTGKQVWEYRPDKKANIRLSGG
PGVGEGLVVVGGLDGEVIALDASTGEEKWKAHVPNEVIAAPAIGMNSVFVRSNDGRVTAF
DAASGERRWFWVQEVPMLSLRGNDGPVLGPGFVFIGNDDGTVSALSANDGRPMWEQPIAQ
PEGRTELDRMADVDGTPVLEGTTLFATSFKKQTLAIDAPSGRPMWSAEHGGAGRIGMASD
RLVVTDPTGSVFGLDKNSGAALWSQPALARRNVTGAAVQGDFAVVADFDGYVHWLKLDDG
AFAARERVGGKAVKAAPVVADGIAIVQNVNGELTAFRLQ