Protein Info for ABIE51_RS09000 in Lysobacter sp. OAE881

Annotation: cupin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 PF08007: JmjC_2" amino acids 135 to 250 (116 residues), 142.9 bits, see alignment E=6e-46 PF02311: AraC_binding" amino acids 211 to 254 (44 residues), 23.3 bits, see alignment 6.7e-09 PF20514: ROXA-like_wH" amino acids 299 to 413 (115 residues), 52.9 bits, see alignment E=5.3e-18

Best Hits

KEGG orthology group: None (inferred from 65% identity to psu:Psesu_1782)

Predicted SEED Role

"FIG002776: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>ABIE51_RS09000 cupin domain-containing protein (Lysobacter sp. OAE881)
MNRKIAPKKNAPVRTTATKTAKSARAELPIEIDARTLPPLGMTPERFLRDYWQKRPLLIR
NALPDFETPVLPEDLAGLACEETALSRIVMHDRANDRWTLRHGPFDEDEFPGMPHQDWTL
LVQDVDKWDPDIAALLEQFRFLPRWRIDDVMISFAAPGGSVGAHVDQYDVFLLQAYGHRR
WQIDAGSNPPLDFRPDVELKLLREFNPTHDWVLGPGDMLYLPPGVPHNGVAEDACLTFSV
GMRAPSAAELLGDFVDTLASDADDALRYTDPDLAPSADPNEIDTAAMNRVVEALNLLRMN
DPDRLGDWFGRFITVYRAGGEVQSGGQARSRIEIEWDLQHGASLFRHPYSRMAWRRAHRK
GEPARLYVSGHDYPLPADDAALIADAAQLDGAGYASLSDAGRDLVQELIQSGHFNLALPD
EEE