Protein Info for ABIE51_RS08880 in Lysobacter sp. OAE881

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1167 PF13175: AAA_15" amino acids 1 to 307 (307 residues), 44.4 bits, see alignment E=4.7e-15 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1157 (1156 residues), 1042.9 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1150 (1148 residues), 225.2 bits, see alignment E=1.7e-70 PF13476: AAA_23" amino acids 6 to 261 (256 residues), 27.7 bits, see alignment E=1e-09 PF06470: SMC_hinge" amino acids 525 to 618 (94 residues), 30 bits, see alignment E=1.5e-10

Best Hits

Swiss-Prot: 77% identical to SMC_XANOR: Chromosome partition protein Smc (smc) from Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)

KEGG orthology group: K03529, chromosome segregation protein (inferred from 78% identity to xca:xccb100_2693)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1167 amino acids)

>ABIE51_RS08880 chromosome segregation protein SMC (Lysobacter sp. OAE881)
MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS
LTDVIFAGSSARKPVSQAMVELIFDNSDHTITGEYAAFNEISVKRTVSRDGSNQYYLNGA
KCRRRDITDLFLGTGLGPRSYSIIEQGMISQVIEAKPEELRVYLEEAAGISKYKERRKET
ETRIRHTRENLDRLNDLREEVGKQLEHLKRQARQAEQYQAIQAERKIKDAEWKALEHRAL
DQKLQGQREKLAQQETRLQQLIAEQREAEREIETGRVKREEAAEALNKAQAASYEVSGTL
ARIEQQIQHQREMANRLNKARDEAMTALAELGQHMGSDQSKLDVLREAVAEAEPRLEQLR
EEDVLRQDALREAEAALTDWQQRWEAHSRAQAEASRAADVERTRIEHLDRQVLEADRRRE
SLGNERSGLDLSALSDAFAELQEKHETQKFSIDSLTEELETRKAALAELQEQQRSTQSEL
AEARKQAQAARGRLSSLETLQHAALGQEQGAALGWLKARGLDSATRVGEALDVDAGWENA
VESALGQMIEGVLVESPETLVEAIGELGEGRLALVDPQNDAVQFAPTSLASKVRGPIAIR
RILARLHAAEDLTAARALLPTLGEGESVITRTGERLGAGWVRVLRSGAAQQGALLREREI
QTLRGEIETLLAREKELESLQVQLRDRTLAAEQQREDAQRTLYMAHRSVSEIAGQLQSQQ
GRLDNARSRIEKIDAELAQLAQNLEAAQDQAREARNRQEEAVMRMTELEDARQALEGERR
SMTDARDQARNIARETRDAAHALALTLESQRTQIAALEQAVSRMVGQRGQLDTRLEELSL
QLAEGDDPVSTLEEQRQVALEQRVLTEQNLTIARTTLDGIDNDLRRFEQVRHQRDDQAIQ
QREAIGQRRLEQQALVLKAEQLAAAVVEAGFVLEDVVNTLTDDMNPQVWERTVSELDGKL
RRLEPVNLAAIAEHAEAEQRKDYLDAQNTDLTTALETLEEAIRKIDRETRGRFKDTFDRV
NSGVQELYPRLFGGGHAYLELTGEDLLDTGVSIMARPPGKRVSNISLLSGGEKAMTAVAL
VFAIFRLNPAPFCLLDEVDAPLDEANVGRLAQMVSEMSEAVQFLFVTHNKATMEAAHQLS
GVTMREPGVSRLVSVDLAEASRLAGVA