Protein Info for ABIE51_RS08815 in Lysobacter sp. OAE881

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details PF01547: SBP_bac_1" amino acids 34 to 319 (286 residues), 122.1 bits, see alignment E=4.9e-39 PF13416: SBP_bac_8" amino acids 35 to 346 (312 residues), 125.4 bits, see alignment E=4e-40

Best Hits

KEGG orthology group: K10188, lactose/L-arabinose transport system substrate-binding protein (inferred from 60% identity to xal:XALc_1315)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>ABIE51_RS08815 sugar ABC transporter substrate-binding protein (Lysobacter sp. OAE881)
MLCALVALVGCKSERDDRTVVRFWAMGFEGEMVRQLIPDFERANPGIRVEVQQLPVTAAH
EKLLTAFAGDGLPDVCGLGNTWLAEFVELRAVAPLEPFLARTPTMPANDYFSGSWDTGLI
GGHVYAVPWYVETRLPFYRKDILEASGVKQVPRTWAEWNDAMAAVKRHVGPDRYAIHLPL
NEYEPLLNLAIQQPDPLLRDDGRYGNFRSAGFKRALTFYNDIFARKWAPAFANTQIANVW
NEFGRGFFTFYVNGPWNIAEFRKRLPPELEGKWGTMPLPGPDGPGASVAGGASFVVFEQS
KHKDAAWKLVAYLSDPQVQVRFHSLTGNLPPRRSAWAGSEALAADPFTLPFREQLERARP
APKVPEWERIAQELRIVGEQMVAGRYTVDEAAAELDRRADAILEKRRWMLEQHAAGGAR