Protein Info for ABIE51_RS08810 in Lysobacter sp. OAE881

Annotation: glucoamylase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF10091: Glycoamylase" amino acids 228 to 474 (247 residues), 293.5 bits, see alignment E=4.9e-92

Best Hits

KEGG orthology group: None (inferred from 74% identity to sml:Smlt3253)

Predicted SEED Role

"Hypothetical protein USSDB1A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (545 amino acids)

>ABIE51_RS08810 glucoamylase family protein (Lysobacter sp. OAE881)
MFDSIRRSVGTASLVAVLVFISGCKQEGPASKAFPIASAPPVEVEPLKPTKLELPPLFRD
VEKRTFQFFWDTTNEVNGLTPDRYPSRPFASIASVGFALTAYPIGIENGWVSRRQAVDRT
LTTLKFFRDIPSGPQAEGKGAYNGFYYHFLDMDTGARYQSWVELSSVDTALLMMGVLFAQ
SYYDRDDPREKEIRDLADTLYKRVDWPWLQRNAPLISMGWFPESGFIQHDWTGYNEAMML
YILAMGSPTHPVAPESWSVWTRTYNDSWGVYQGEEYLSFGPLFGHQYSHVWIDFRGIQDD
YMRERGIDYFENSRRAAYAQRAYAIANPMKWKDYGPEVWGLTASDGPQQTLQEFRGEQRQ
FRHYSARGAGLRDTFDDGTIAPTAAIASLPFAPEIVIPSTVAMHERYGEYLYSSYGFLDS
FNRSFDFDIPLKTGRLVPGEGWVASDYIGIDQGPILAMISNYRNEFVWNVMKRNKYIRDG
LQKAGFKGGWLEPAKEGEAAPTQPKPQTQAEKDAATARALGEAESRVNRASQTPQPAPAP
EPKTK