Protein Info for ABIE51_RS08300 in Lysobacter sp. OAE881

Annotation: preprotein translocase subunit SecG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details transmembrane" amino acids 55 to 73 (19 residues), see Phobius details PF03840: SecG" amino acids 4 to 71 (68 residues), 73.6 bits, see alignment E=5.9e-25 TIGR00810: preprotein translocase, SecG subunit" amino acids 4 to 72 (69 residues), 78.5 bits, see alignment E=1.5e-26

Best Hits

KEGG orthology group: K03075, preprotein translocase subunit SecG (inferred from 58% identity to xal:XALc_0997)

Predicted SEED Role

"Preprotein translocase subunit SecG (TC 3.A.5.1.1)" in subsystem Murein hydrolase regulation and cell death (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>ABIE51_RS08300 preprotein translocase subunit SecG (Lysobacter sp. OAE881)
MLLLLNVIYVLIAIAMVALILMQRGAGAQAGSGFGGGASATVFGARGSANFLSKATKWLA
IAFFAISLFMAWQATRKATGDTGAAPSGVMAEVPAVPSAPAPATGNAAVPAAPSAAPAPA
SAAPASTVPQAPAAQEAVPAAPAPAQQAPATQSPEPAKPQPPAGG