Protein Info for ABIE51_RS08120 in Lysobacter sp. OAE881

Annotation: DUF979 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 31 to 51 (21 residues), see Phobius details amino acids 57 to 74 (18 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 215 to 245 (31 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details PF06166: DUF979" amino acids 5 to 320 (316 residues), 349 bits, see alignment E=1.2e-108

Best Hits

KEGG orthology group: None (inferred from 49% identity to esa:ESA_02630)

Predicted SEED Role

"FIG001614: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (321 amino acids)

>ABIE51_RS08120 DUF979 domain-containing protein (Lysobacter sp. OAE881)
MLSIEHFYLLLALFLLYAGVRNLREKRFTHAAFWIVIAVLFAGGKFVLDAAKTGDKVPAQ
LAGAAVIALALLATRMRREHIDEAPAAQRLASAMRLGHKLFVPALIIPVVTVLIVLFGAK
LAIGGTPVFGEGSITLIGLALACVVATFAAIHITRERPTAALGEGRRLLDTMGWAALLPI
VLATLGGVFAASGVGDAVASIVSMLIPADSRLACVLAYGLGMVLFTVIMGNAFAAFPVMT
AGIGLPLLIEQHGAAPAILGSIGMLTGYCGTLMTPMAANFNLVPAALLELDDPNAVIRAQ
LPTAIPLLLVNLALMYWLAFR