Protein Info for ABIE51_RS07420 in Lysobacter sp. OAE881

Annotation: UDP-glucuronic acid decarboxylase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF04321: RmlD_sub_bind
  • amino acids 13 to 290 (278 residues), 29.7 bits, E=8.6e-11
• PF01370: Epimerase
  • amino acids 14 to 247 (234 residues), 168.4 bits, E=4.7e-53
• PF01073: 3Beta_HSD
  • amino acids 15 to 237 (223 residues), 35.7 bits, E=1.2e-12
• PF16363: GDP_Man_Dehyd
  • amino acids 15 to 320 (306 residues), 161.4 bits, E=1e-50
• PF07993: NAD_binding_4
  • amino acids 17 to 189 (173 residues), 21.2 bits, E=3.6e-08

Best Hits

KEGG orthology group: K01710, dTDP-glucose 4,6-dehydratase [EC: 4.2.1.46] (inferred from 64% identity to rce:RC1_4028)

MetaCyc: 51% identical to UDP-glucuronate decarboxylase (Nicotiana tabacum)
UDP-glucuronate decarboxylase. [EC: 4.1.1.35]

Predicted SEED Role

"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)" in subsystem Rhamnose containing glycans or dTDP-rhamnose synthesis or linker unit-arabinogalactan synthesis (EC 4.2.1.46)

MetaCyc Pathways

• O-antigen building blocks biosynthesis (E. coli) (10/11 steps found)
• dTDP-β-L-rhamnose biosynthesis (5/5 steps found)
• UDP-α-D-xylose biosynthesis (2/2 steps found)
• dTDP-4-O-demethyl-β-L-noviose biosynthesis (3/5 steps found)
• dTDP-β-D-fucofuranose biosynthesis (2/4 steps found)
• dTDP-6-deoxy-α-D-allose biosynthesis (2/4 steps found)
• dTDP-N-acetylthomosamine biosynthesis (2/4 steps found)
• dTDP-N-acetylviosamine biosynthesis (2/4 steps found)
• dTDP-L-daunosamine biosynthesis (3/6 steps found)
• dTDP-sibirosamine biosynthesis (3/6 steps found)
• dTDP-α-D-mycaminose biosynthesis (2/5 steps found)
• dTDP-3-acetamido-α-D-fucose biosynthesis (2/5 steps found)
• dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis (2/5 steps found)
• dTDP-β-L-digitoxose biosynthesis (3/7 steps found)
• dTDP-β-L-olivose biosynthesis (3/7 steps found)
• dTDP-α-D-ravidosamine and dTDP-4-acetyl-α-D-ravidosamine biosynthesis (2/6 steps found)
• dTDP-D-desosamine biosynthesis (2/6 steps found)
• dTDP-β-L-4-epi-vancosamine biosynthesis (3/8 steps found)
• dTDP-β-L-megosamine biosynthesis (3/8 steps found)
• dTDP-β-L-mycarose biosynthesis (2/7 steps found)
• UDP-sugars interconversion (3/9 steps found)
• dTDP-α-D-forosamine biosynthesis (3/9 steps found)
• dTDP-α-D-olivose, dTDP-α-D-oliose and dTDP-α-D-mycarose biosynthesis (3/9 steps found)
• superpathway of enterobacterial common antigen biosynthesis (3/10 steps found)
• superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis (6/19 steps found)
• superpathway of novobiocin biosynthesis (3/19 steps found)
• superpathway of erythromycin biosynthesis (2/19 steps found)
• superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis (12/33 steps found)
• superpathway of megalomicin A biosynthesis (3/22 steps found)
• superpathway of dTDP-glucose-derived antibiotic building blocks biosynthesis (3/23 steps found)

KEGG Metabolic Maps

• Biosynthesis of vancomycin group antibiotics
• Nucleotide sugars metabolism
• Polyketide sugar unit biosynthesis
• Starch and sucrose metabolism
• Streptomycin biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 4.2.1.46

Use Curated BLAST to search for 4.1.1.35 or 4.2.1.46

Protein Sequence (343 amino acids)

>ABIE51_RS07420 UDP-glucuronic acid decarboxylase family protein (Lysobacter sp. OAE881)
MDGVDRNKNVRRRALVAGGAGFLGAHLCRRLVQDGYDVTAVDSLVTGRLSNLADMLDGTT
GEGRVRFVRHDVTEPFDAHFDASADIVFNLACCASPIHYQAQPVHTLKTCLEGALNLLQL
AHRNGARIFQASTSEVYGEPETHPQKEAYRGAVSTTGPRACYDEGKRCAETLFFDYRRQH
GVQIKVARIFNTYGPFMREDDGRVVSNLIVQALRNEPLTIYGEGLQTRSFCYVDDLVQGI
MRLMATPPGFTGPVNLGNPVEVTVLELAERIISLTGSHSRLVRKPMPTDDPTRRCPDISL
AREHLGWEPRVALDEGLRRTIAWFASQEASRDVRAREVDRDCA