Protein Info for ABIE51_RS06865 in Lysobacter sp. OAE881

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 PF13432: TPR_16" amino acids 100 to 152 (53 residues), 18.6 bits, see alignment 1.1e-06 amino acids 129 to 193 (65 residues), 26 bits, see alignment E=5.6e-09 amino acids 199 to 259 (61 residues), 34.1 bits, see alignment E=1.6e-11 amino acids 272 to 322 (51 residues), 16.8 bits, see alignment 4.2e-06 PF13181: TPR_8" amino acids 130 to 152 (23 residues), 11.9 bits, see alignment (E = 0.00011) amino acids 227 to 259 (33 residues), 14 bits, see alignment (E = 2.4e-05) amino acids 260 to 292 (33 residues), 14.8 bits, see alignment (E = 1.3e-05) PF13414: TPR_11" amino acids 206 to 238 (33 residues), 28 bits, see alignment (E = 7e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>ABIE51_RS06865 tetratricopeptide repeat protein (Lysobacter sp. OAE881)
MFALQSDIAGEVVQALIDVLPSGEIEAARQTLARRLTPTRSVAAYDAYLKGEQRMREQAG
GDERGAASAINFYRGALAIDPSFARAQAGICQAEITRFEDARDSAAFARAQSACEQAMKM
DPSLREVSLAMGDLHRTQGNAKEANAYYERAVTDPALRVPGYLGLAEVASTQGQGKVAME
YFERARQVAPRNPRIAQKRGYHLLVNGDVPGAIASYREALEYAPDDADLWSSLGGLYAIS
GDAAQASDAYERSLQIKPTYEALSNLGSMKFEEGAYEQAAALYRHASEIDPGDFRVWGNL
GDALAAGGATPDQTRAQYEQAATLGRRYLELKSDDAQGLALVAWYSANLDRADEARALQA
KAEALGTERGEVALLGAQTMARLDDSPAARRHMDFARKHGIPQQRIDALPLLRSLTAKVD
TQSTRESGTAQ