Protein Info for ABIE51_RS06840 in Lysobacter sp. OAE881

Annotation: glycoside hydrolase family 31 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13802: Gal_mutarotas_2" amino acids 50 to 219 (170 residues), 157 bits, see alignment E=1.4e-49 PF01055: Glyco_hydro_31_2nd" amino acids 261 to 591 (331 residues), 385.8 bits, see alignment E=3.9e-119 PF21365: Glyco_hydro_31_3rd" amino acids 599 to 686 (88 residues), 58.5 bits, see alignment E=1.5e-19 PF17137: DUF5110" amino acids 702 to 770 (69 residues), 36.3 bits, see alignment E=9.4e-13

Best Hits

Predicted SEED Role

"Alpha-glucosidase (EC 3.2.1.20)" in subsystem D-Galacturonate and D-Glucuronate Utilization or Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>ABIE51_RS06840 glycoside hydrolase family 31 protein (Lysobacter sp. OAE881)
MKAMSWALAVALVFAVAGPAHAGGWRHLGDAGRIERRADGIVVHSGPARLQVSVHADGVF
RVRLAPDGKADGDASWAVVQAAEPAKVTIDETRDAVRVRADGVVAVVHRSPLRVDFVDDT
GRALLADDASLPMAWLPGEHGTRVRVWKSMPADEHYYGLGDKAGPLDRRGRAFAMWNSES
YGWQGTTDPLYKSIPFFIGLRGGVAYGVFFDNVHRSSFDFGKESDGTLSFGAEDGPLDYY
FIAGPQPAQVIERYTALTGRTPLPPLWTLGFQQSRYTYHPESKVREIAKQLRDHRIPSDA
IYLDIDYQKGYAPFTVDRAQFPTFEKMIDDLRKDGLRTVLITDLHIKHDPDNGYAAFDSG
MRSDAFIRNPDGSLYIGEVWPGDSVFPDFTLTRVRDWWGGLYRDFAAMGAAGYWNDMNEP
SVFNVPGNTMSLDAVHRMDDGTTRDHRAIHNVYGMLNARATYEGLLKLQPTQRPFVLTRA
AYAGAQRYAATWTGDNTASWFHLAQSTPNLLSLGLSGMAMSGDDIGGFIGSPPPDLLTRW
FQLGAFNPVFRNHAATDTRPHEAWVDGPKHEALRRDAIELRYRLMPYLYTAAEENARTGM
PIMRPVFLRWPDAEAFYGNDRDFLFGGDLFVAPVVDERLDAHPVSLPPGGWYAFGTSQRY
VAAKTPMKLDPRPSGTPLYARAGAIVPMQALVQHTGETPKGPLELQVYLPDAGSSECRGS
LYQDDGESFAYREGKFLRVGYACEVAKSSTTLSAHVEHSGFAPWWKAVRVTMFGVAQRPA
SVRVNGVAVAGWKYDAAAKTLTLDVVDAVRDWKVEVVR