Protein Info for ABIE51_RS06710 in Lysobacter sp. OAE881

Annotation: thioredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 PF00085: Thioredoxin" amino acids 13 to 114 (102 residues), 99 bits, see alignment E=2.9e-32 TIGR01068: thioredoxin" amino acids 17 to 115 (99 residues), 106.8 bits, see alignment E=2.7e-35 PF13098: Thioredoxin_2" amino acids 30 to 113 (84 residues), 33 bits, see alignment E=1.3e-11 PF14559: TPR_19" amino acids 152 to 193 (42 residues), 26.8 bits, see alignment 1e-09 PF14561: TPR_20" amino acids 208 to 294 (87 residues), 79.1 bits, see alignment E=5.2e-26

Best Hits

KEGG orthology group: K05838, putative thioredoxin (inferred from 69% identity to xcb:XC_1495)

Predicted SEED Role

"FIG000875: Thioredoxin domain-containing protein EC-YbbN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (294 amino acids)

>ABIE51_RS06710 thioredoxin (Lysobacter sp. OAE881)
MTISDATANAHVFDATADNFEAEVLQKSMQVPVLVDFWAEWCGPCKTLGPILEKLAADYH
GAFRLAKVDVDKEQQLAGAFQVRSIPTVFLVKDGQLVDGFPGALPEGQLREFLTHHGIQP
ADPAADDAAAPETGAAPVDPHAEVVRLRHESDAAPDNAELKLDLALALLRTGAAQEAEQL
LDALPANLATDDRTIRARSRLGFAALLKDAPPAEVLEAAIASNPDDLRARHLLGALKIVD
GDAQAGLEQFLEMLRRDKAYEDGLPRKALIDAFRVVEDEDLVGQYRRKMSSLLF