Protein Info for ABIE51_RS06655 in Lysobacter sp. OAE881

Annotation: nuclear transport factor 2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 PF13474: SnoaL_3" amino acids 9 to 132 (124 residues), 61 bits, see alignment E=2.8e-20 PF08332: CaMKII_AD" amino acids 11 to 129 (119 residues), 22.3 bits, see alignment E=2.5e-08 PF14534: DUF4440" amino acids 13 to 122 (110 residues), 26.1 bits, see alignment E=2.1e-09 PF12680: SnoaL_2" amino acids 15 to 120 (106 residues), 38.2 bits, see alignment E=3.8e-13

Best Hits

KEGG orthology group: None (inferred from 50% identity to sde:Sde_3076)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>ABIE51_RS06655 nuclear transport factor 2 family protein (Lysobacter sp. OAE881)
MNLANDVFRQFLDGYRDAALAKDVEAFVAPYADDVHVFDMWNDWSMQGLASWRRMAQTWF
GSLGDERVQVEFDDVASFVADDMVCGHATVTYTALAIDGSKLRSLSNRMTAVLQRRDGVW
RVVHEHTSAPIEHTSLKAILQRPA