Protein Info for ABIE51_RS06570 in Lysobacter sp. OAE881

Annotation: exopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 47 to 85 (39 residues), see Phobius details amino acids 133 to 150 (18 residues), see Phobius details amino acids 156 to 173 (18 residues), see Phobius details amino acids 181 to 209 (29 residues), see Phobius details PF06055: ExoD" amino acids 19 to 195 (177 residues), 163.8 bits, see alignment E=1.4e-52

Best Hits

KEGG orthology group: None (inferred from 60% identity to sml:Smlt1703)

Predicted SEED Role

"ExoD protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>ABIE51_RS06570 exopolysaccharide biosynthesis protein (Lysobacter sp. OAE881)
MTPPADQDRHEYREAGTRALLDVFAAGNPDEQLRMGDVLHGLGDRSFGMLLFVSTIPAFI
PIPGVGGAISGPLVILIGLQLLIGLRQPWLPKFLARRGPHRHAMARFRDLLAPWLTRLEK
VVKPRLPVLLDHRVADFFTGVLLVLLGLLLSLPIPFTNYLFGALLLLFAFALLERDGWLM
AVAWAAGVIAIAVFGVLSGSLATAAAGWIDMLF