Protein Info for ABIE51_RS06515 in Lysobacter sp. OAE881

Annotation: ribosome assembly RNA-binding protein YhbY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 TIGR00253: putative RNA-binding protein, YhbY family" amino acids 5 to 100 (96 residues), 100.5 bits, see alignment E=3e-33 PF01985: CRS1_YhbY" amino acids 5 to 88 (84 residues), 107.8 bits, see alignment E=1.4e-35

Best Hits

Swiss-Prot: 50% identical to Y1333_HAEIN: RNA-binding protein HI_1333 (HI_1333) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07574, RNA-binding protein (inferred from 77% identity to psu:Psesu_0798)

Predicted SEED Role

"FIG004454: RNA binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (101 amino acids)

>ABIE51_RS06515 ribosome assembly RNA-binding protein YhbY (Lysobacter sp. OAE881)
MQTVLTAAQTRFLRGQAHDLKAMLQVGGKGITDSLVAEIDLALEHHELIKVKVGAEDRDA
RDAMIDEIAQRTGAALVQRIGHTAVLYRPSKDRRQIVLPRA