Protein Info for ABIE51_RS06400 in Lysobacter sp. OAE881

Annotation: DUF418 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 transmembrane" amino acids 31 to 49 (19 residues), see Phobius details amino acids 69 to 97 (29 residues), see Phobius details amino acids 117 to 149 (33 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details amino acids 302 to 325 (24 residues), see Phobius details amino acids 346 to 369 (24 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details PF04235: DUF418" amino acids 253 to 415 (163 residues), 152.2 bits, see alignment E=6.4e-49

Best Hits

Predicted SEED Role

"Transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>ABIE51_RS06400 DUF418 domain-containing protein (Lysobacter sp. OAE881)
MTTQVSSTRSREHASAAVPVAAGERVVSLDVLRGFALLGIGLMNVEYFSRPLRDMGQGLD
PSLPPVDYALAWLVYVFVQGKFWILFSLLFGMGFAVLDERARVAGIDFRTLYLRRAAGLM
LIGLVHALLIWAGDILVTYALGAVVMLWFRDAEPARQGRWGAALYGVPALALLLMAGMMW
VSPEPAQADQSASEAARLALEEARRAEEVVAYSGGSWWDAVLVRGRFFIDNLDETLVFEV
FALGIFLMGAWLLRSGAITDPGAHLRLHRVLRFVALPAGVGLALASVLVATRFDWETDGA
RALLAMSLMLLASPLMSLGYLSWTLRALQTRVGRMLGALAPAGRMALTNYLLQSLVGTLV
FYGYGLGLWGRVPRRWELLGVVVLFAIQVAASRLWLSHFRFGPVEWLWRACTYGRFPPMR
ATSALTP