Protein Info for ABIE51_RS05990 in Lysobacter sp. OAE881

Annotation: translational GTPase TypA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 PF00009: GTP_EFTU" amino acids 5 to 196 (192 residues), 189.5 bits, see alignment E=1.1e-59 TIGR00231: small GTP-binding protein domain" amino acids 6 to 140 (135 residues), 85 bits, see alignment E=5.1e-28 TIGR01394: GTP-binding protein TypA/BipA" amino acids 6 to 604 (599 residues), 931.3 bits, see alignment E=2e-284 PF01926: MMR_HSR1" amino acids 9 to 130 (122 residues), 22.8 bits, see alignment E=2.1e-08 PF03144: GTP_EFTU_D2" amino acids 221 to 290 (70 residues), 48.9 bits, see alignment E=1.8e-16 PF00679: EFG_C" amino acids 400 to 479 (80 residues), 79.3 bits, see alignment E=4.5e-26 PF21018: BipA_C" amino acids 490 to 598 (109 residues), 145 bits, see alignment E=1.8e-46

Best Hits

Swiss-Prot: 67% identical to TYPA_HAEIN: GTP-binding protein TypA/BipA homolog (typA) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K06207, GTP-binding protein (inferred from 91% identity to xom:XOO_0888)

Predicted SEED Role

"GTP-binding protein TypA/BipA" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (609 amino acids)

>ABIE51_RS05990 translational GTPase TypA (Lysobacter sp. OAE881)
MSIERLRNIAIVAHVDHGKTTLVDCLLKQSGTLSERTVLAERAMDSNDQEKERGITILAK
NTAITWQGNRINIVDTPGHADFGGEVERVLSMVDSVLILVDAMDGPMPQTRFVTQKAFAM
GFKPIVVVNKIDRPGARPDWVIDQVFDLFDKLGATNEQLDFPIVYASALHGYASLDDAAR
SGDMTPLYEAIMKHVAPPQVDEEGPFQMRISQLDYSNFVGLIGIGRIQRGKVKKNMPVSV
VGRDGKKRQGKIVQVLGFMGLERIETEEASAGDIVAIAGITDLSISDTVCALDAPEALPA
LTVDEPTISMTFQVNNSPFAGHKDYSGGKFLTSRQLRERLEREMLHNVALKVEEGSDPDK
FLVSGRGELHLSVLIENMRREGFELAVSRPEVIIKEIDGQLMEPIEQLVVDIEEQHQGGV
MEKLGIRKGQLKNMEPDGKGRVRLDYMIPARGLIGFQNEFRTLTQGSGLLFHVFDHYGPK
ETGAIAKRLNGVMIANAAGVTPAYALGPLEERGRLFAAEGDNVYEGQLVGIHSKDNDLTV
NAIKTKPLTNMRASGKDDAIKLTPAIKYSLEQALDFIEDDELVEVTPKEIRLRKKQLTES
ERKRASRAA