Protein Info for ABIE51_RS05340 in Lysobacter sp. OAE881

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 127 to 150 (24 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 186 to 203 (18 residues), see Phobius details amino acids 215 to 233 (19 residues), see Phobius details PF03741: TerC" amino acids 16 to 205 (190 residues), 156.8 bits, see alignment E=2.5e-50

Best Hits

Swiss-Prot: 55% identical to Y056_HAEIN: UPF0053 protein HI_0056 (HI_0056) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 70% identity to xal:XALc_2770)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>ABIE51_RS05340 TerC family protein (Lysobacter sp. OAE881)
MIELLTDPHVWLTLVTLSAIEIVLGIDNLVFISIAVSKLPYAQREKARKFGIAVACITRI
ALLLTLAWLAGLTNDLFNVLGQGISVRDLVLILGGAFLLVKGTMEIRDLIVGEGEEEDIH
TKPKASFMGVIAQIAVIDIVFSLDSVIAAVGMANHTPVMVAAILLAVAVMLLASKPLGQF
IDHNPTIKMLALAFIVLVGVYLVADGFEMHIPKGYIYGAMGFSALVECLNLWAKRRAQRR
LQPE