Protein Info for ABIE51_RS04570 in Lysobacter sp. OAE881

Annotation: general secretion pathway protein GspN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details

Best Hits

Swiss-Prot: 44% identical to XPSN_XANCP: General secretion pathway protein N (xpsN) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K02463, general secretion pathway protein N (inferred from 44% identity to xcb:XC_3564)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>ABIE51_RS04570 general secretion pathway protein GspN (Lysobacter sp. OAE881)
MRLDDAGPRTWLLATVAGWAVLAWLLAVFGMGRHAQALEADPGLLRPLPNARPPAPQRLG
PLSQYAAIAQRPLFSQDRLPKPFFLQGEGEGEGQQTAFDYVLTSVLITPTLKMAILQPAD
GSESVRVKLGEVPESHPAWRLTSLDARSAVFEGPEGRREMTLRVFDGNGGQPPTAVATAP
GTNRQQPVGVPVPPAAANAAAANAARPGNASANARPAGNGTASNRNANNTQTPAPPPAPE
PSENTPMTPEAQMEAIRKRIEARRAQMRQQQSEQPPAQTP