Protein Info for ABIE51_RS04495 in Lysobacter sp. OAE881

Annotation: site-specific tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 PF02899: Phage_int_SAM_1" amino acids 28 to 109 (82 residues), 70.1 bits, see alignment E=1.6e-23 TIGR02225: tyrosine recombinase XerD" amino acids 29 to 316 (288 residues), 376.4 bits, see alignment E=4.9e-117 PF00589: Phage_integrase" amino acids 131 to 302 (172 residues), 162.1 bits, see alignment E=1.2e-51

Best Hits

Swiss-Prot: 72% identical to XERD_XANCP: Tyrosine recombinase XerD (xerD) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 72% identity to xoo:XOO0839)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (317 amino acids)

>ABIE51_RS04495 site-specific tyrosine recombinase XerD (Lysobacter sp. OAE881)
MTAPTPAQRRSIAMALPPLPDADAALIGRFLDAIWAENGLAQPTLDSYRRDLELLARYRS
DRKAGLANADRAALFDYLAWRSQQGYSPRSNARLLSALRAFYAWLVRRGERTDDPTALLD
PPKLPRSLPKALAESQIEALLSAPDIATPLGLRDRAMLELMYAAGLRVSELVNLPATAVN
LRQGALRVMGKGSKERLVPLGEEAQHWLERYLAQSRPQLAGKRALAPLFLSANGEAPTRQ
QFWQLVKKYAAVAGIDPDRISPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTL
VAREQLKQLHAKHHPRG