Protein Info for ABIE51_RS04490 in Lysobacter sp. OAE881

Annotation: RDD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 110 to 133 (24 residues), see Phobius details PF06271: RDD" amino acids 12 to 146 (135 residues), 74.8 bits, see alignment E=4.3e-25

Best Hits

KEGG orthology group: None (inferred from 68% identity to sml:Smlt0679)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>ABIE51_RS04490 RDD family protein (Lysobacter sp. OAE881)
MASTPASSRPSALIGWRVLALVYDMWPVIAMWMVASLVFTVGFTMSGHASRENIAPFSAL
QWVLWLVCWLITGAYALLSWRRGGQTLGMRPWRLKVVADDGVSAPVLRALVIRFAVGSVS
LLLGGFGFWWAWVDRERLTWHDRASGTRMVRLARR